CRAN Package Check Results for Package spsurv

Last updated on 2024-04-19 22:56:04 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.0 397.00 281.61 678.61 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.0 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.0 843.43 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.0 1044.06 NOTE
r-prerel-macos-arm64 1.0.0 197.00 NOTE
r-prerel-windows-x86_64 1.0.0 266.00 256.00 522.00 NOTE
r-patched-linux-x86_64 1.0.0 319.83 323.47 643.30 NOTE
r-release-linux-x86_64 1.0.0 307.63 325.89 633.52 NOTE
r-release-macos-arm64 1.0.0 208.00 NOTE
r-release-macos-x86_64 1.0.0 279.00 ERROR
r-release-windows-x86_64 1.0.0 375.00 321.00 696.00 NOTE
r-oldrel-macos-arm64 1.0.0 191.00 NOTE
r-oldrel-windows-x86_64 1.0.0 368.00 309.00 677.00 NOTE

Check Details

Version: 1.0.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.0.0
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.0.0
Check: installed package size
Result: NOTE installed size is 5.8Mb sub-directories of 1Mb or more: doc 1.5Mb libs 3.9Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-prerel-macos-arm64, r-prerel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-windows-x86_64

Version: 1.0.0
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘rstantools’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-macos-arm64

Version: 1.0.0
Check: examples
Result: ERROR Running examples in ‘spsurv-Ex.R’ failed The error most likely occurred in: > ### Name: bppo > ### Title: Bernstein Polynomial Based Proportional Odds Model > ### Aliases: bppo > > ### ** Examples > > > library("spsurv") > data("veteran") Warning in data("veteran") : data set ‘veteran’ not found > > fit <- bppo(Surv(time, status) ~ karno + celltype, + data = veteran) Error in optimHess(theta, fn, gr, control = list(fnscale = -1)) : non-finite value supplied by optim Calls: bppo ... spbp.mle -> <Anonymous> -> <Anonymous> -> .local -> optimHess Execution halted Flavor: r-release-macos-x86_64

Version: 1.0.0
Check: tests
Result: ERROR Running ‘testthat.R’ [17s/31s] Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── Error ('test.R:33:1'): (code run outside of `test_that()`) ────────────────── Error in `optimHess(theta, fn, gr, control = list(fnscale = -1))`: non-finite value supplied by optim Backtrace: ▆ 1. └─spsurv::bppo(Surv(time, status) ~ karno + factor(celltype), data = veteran) at test.R:33:0 2. └─spsurv:::spbp.default(...) 3. └─spsurv:::spbp.mle(standata = standata, ...) 4. ├─rstan::optimizing(...) 5. └─rstan::optimizing(...) 6. └─rstan (local) .local(object, ...) 7. └─stats::optimHess(theta, fn, gr, control = list(fnscale = -1)) [ FAIL 1 | WARN 7 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Flavor: r-release-macos-x86_64