NGCHM: Next Generation Clustered Heat Maps

Next-Generation Clustered Heat Maps (NG-CHMs) allow for dynamic exploration of heat map data in a web browser. 'NGCHM' allows users to create both stand-alone HTML files containing a Next-Generation Clustered Heat Map, and .ngchm files to view in the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020) <doi:10.12688/f1000research.20590.2> for more details.

Version: 1.0.2
Depends: R (≥ 3.4.0)
Imports: digest, grDevices, htmltools, httr, jsonlite, logger (≥ 0.2.0), methods, stats, tsvio, utils
Suggests: knitr, rmarkdown, Rtsne, testthat, umap, uwot
Enhances: NGCHMDemoData, NGCHMSupportFiles
Published: 2024-03-28
Author: Bradley M Broom ORCID iD [aut], Mary A Rohrdanz [ctb, cre], Chris Wakefield [ctb], James Melott [ctb], MD Anderson Cancer Center [cph]
Maintainer: Mary A Rohrdanz <marohrdanz at mdanderson.org>
License: GPL-3
URL: https://md-anderson-bioinformatics.github.io/NGCHM-R/, https://github.com/MD-Anderson-Bioinformatics/NGCHM-R
NeedsCompilation: no
SystemRequirements: Java (>= 11) Git
Additional_repositories: https://md-anderson-bioinformatics.r-universe.dev
Materials: README
CRAN checks: NGCHM results

Documentation:

Reference manual: NGCHM.pdf

Downloads:

Package source: NGCHM_1.0.2.tar.gz
Windows binaries: r-prerel: NGCHM_1.0.2.zip, r-release: NGCHM_1.0.2.zip, r-oldrel: NGCHM_1.0.2.zip
macOS binaries: r-prerel (arm64): NGCHM_1.0.2.tgz, r-release (arm64): NGCHM_1.0.2.tgz, r-oldrel (arm64): NGCHM_1.0.2.tgz, r-prerel (x86_64): NGCHM_1.0.2.tgz, r-release (x86_64): NGCHM_1.0.2.tgz
Old sources: NGCHM archive

Linking:

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