RESET: Reconstruction Set Test

Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

Version: 1.0.0
Depends: R (≥ 3.6.0), Matrix
Imports: methods (≥ 3.6.0)
Suggests: Seurat (≥ 4.0.0), SeuratObject (≥ 4.0.0), sctransform (≥ 0.3.2)
Published: 2024-03-06
Author: H. Robert Frost [aut, cre]
Maintainer: H. Robert Frost <rob.frost at dartmouth.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: RESET results

Documentation:

Reference manual: RESET.pdf
Vignettes: 10x PBMC 3k log normalization MSigDB BioCarta collection example
Seurat pbmc_small log normalization example

Downloads:

Package source: RESET_1.0.0.tar.gz
Windows binaries: r-devel: RESET_1.0.0.zip, r-release: RESET_1.0.0.zip, r-oldrel: RESET_1.0.0.zip
macOS binaries: r-release (arm64): RESET_1.0.0.tgz, r-oldrel (arm64): RESET_1.0.0.tgz, r-release (x86_64): RESET_1.0.0.tgz
Old sources: RESET archive

Linking:

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