ern: Effective Reproduction Number Estimation

Estimate the effective reproduction number from wastewater and clinical data sources.

Version: 2.0.0
Depends: R (≥ 4.1.0)
Imports: assertthat, coda, dplyr, EpiEstim, ggplot2, lubridate, patchwork, rjags, runjags, stats, stringr, tibble, tidyr, zoo
Suggests: knitr, rmarkdown, bookdown, purrr, testthat (≥ 3.0.0)
Published: 2024-04-22
DOI: 10.32614/CRAN.package.ern
Author: David Champredon ORCID iD [aut, cre], Warsame Yusuf ORCID iD [aut], Irena Papst ORCID iD [aut]
Maintainer: David Champredon <david.champredon at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: ern citation info
Materials: README
CRAN checks: ern results


Reference manual: ern.pdf
Vignettes: Estimating the effective reproductive number using 'ern'


Package source: ern_2.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): ern_2.0.0.tgz, r-oldrel (arm64): ern_2.0.0.tgz, r-release (x86_64): ern_2.0.0.tgz, r-oldrel (x86_64): ern_2.0.0.tgz
Old sources: ern archive


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